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VISTA Software
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The zip files below contain snapshots (sometimes nightly)
of the software that we use in the VISTA labs.
This code involves the work of many people from the Wandell, Heeger
and Grill-Spector labs. This code was developed as an undisciplined growth, so it may
contain little problems and is not always easy to follow. Although we use it
every day and have great confidence in the core routines, we are also
familiar with its limitations. We are constantly working on revisions
and improvements and just plain bug fixes.
There is a lab Wiki
page that serves as a user guide. Also, in some of the packages
there is a ReadMe file that describes
some of the basic functionality of the software and brief installation
notes.
Unless otherwise noted, all our code is released under the
GPL. The authors
of the code retain all copyrights. By downloading our code from the
links below or from our CVS repository, you agree to be bound by
the terms of the GPL.
Contents:
- mrVista: The main analysis tools are packaged as mrVista (includes
cvs modules mrLoadRet-3.0, mrDiffusion, Anatomy, filters, mrFlatMesh and mrAlign).
- mrDiffusion.zip: Our diffusion imaging analysis and visualization package.
Requires several components from mrVista, so this package includes the entire VISTASOFT distribution.
- ITKGray: Our branch of the ITKSnap segmentation tool. We've added most of
functionality from mrGray to this app and are using as a cross-platform replacement
for the aging mrGray, which is a Windows-only app. The Windows version currently only
runs under cygwin (see
the wiki page
for installation instructions). The linux version is compiled under 32-bit Fedora Core 4,
but it runs well on most modern version of 32-bit and 64-bit linux (we've tested 64-bit FC8
and 32- and 64-bit Ubuntu 7.10). It can be compiled under Mac-OSX, but we haven't had the
time to set up the proper build environment for this. If you'd like to get the source code
and try to build it under your favorite platform, just contact bobd at stanford-dot-edu.
- mrGray: The mrGray windows application for white-gray segmentation
and 3-d viewing. The mrGray source code is also available (mrGraySrc.zip).
You can also get a sample dataset for mrGray (mrGray_sampleData.zip). NOTE:
mrGray is being replaced by the new project ITKGray.
- displayCode_OSX: We have ported our experimental control
code to run under the
PsychToolbox
on OS-X. The new exptTools2 and some sample applications are available
in 'displayCode_OSX'.
Downloads:
- DTI and structural anatomy:
- Stimulus display and calibration:
- VISTASRC Source Code:
- fMRI:
- itkGray:
- mrGray:
Data for testing the software:
You can also browse
the CVS repository where we keep track of the software and
modifications.
Image Systems Engineering Toolkit (ISET) . We have written a
set of software tools (Matlab) to simulate the encoding of light in
cameras and the eye. This
ISET software (source included) is available freely for 30 day
evaluation. This code is not available for CVS download.