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Neuroimaging

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Presentations and Commentaries

1. Maps, Plasticity, and Reading (HBM Keynote, 2007)
   B. A. Wandell
   Human Brain Mapping (HBM, 2007)
2. NIPS Tutorial on Diffusion Tensor Imaging.
   B. A. Wandell, A. Sherbondy and R.F. Dougherty (2006)
   Neural Information Processing Society (NIPS)
3. Critical Periods Revisited: Plasticity of Sensory Systems
   presentations by at the New York Academy of Sciences.
   B. A. Wandell, September 24, 2007, NY, NY
   This eBriefing includes presentations by Movshon, Gilbert and Hensch and several overviews.
4. What's in your mind?
   Wandell (2008), Nature Neuroscience, vol. 11, No. 4.
   Commentary on Identifying natural images from human brain activity
   Kay et al., (2008) Nature v. 452, pp. 352-355
5. Colour vision: Cortical circuitry for appearance
   Wandell (2008), Current Biology,DOI: 10.1016/j.cub.2008.01.045
   Commentary on Perception matches selectivity in the human anterior color center
   Murphey et al., (2008) Current Biology v. 18, pp. 216-220.

Reviews

1. Visual Field Maps in Human Cortex
   B. A. Wandell, S.O. Dumoulin and A. A. Brewer (2007)
   Neuron, V. 56 , p. 366-383
2. Visual Areas in Humans
   B. A. Wandell, S.O. Dumoulin and A. A. Brewer (2007)
   Enclyclopeda of Neuroscience Editor L. Squire
3. Computational Neuroimaging; Color Signals in the Visual Pathways.
   B. A. Wandell, S.O. Dumoulin and A. A. Brewer (2006)
   Neuro-opthalmol. Jpn. vol. 23 pp. 324-343
4. Computational Neuroimaging: Maps and Tracts in the Human Brain.
   B. A. Wandell and R. F. Dougherty (2006).
   Proc. of the SPIE-IS&T Electronic Imaging, vol. 6057, pp. 1-12.
5. Visual Field Map Clusters in Human Cortex.
   B. Wandell, A. A. Brewer and R.F. Dougherty (2005)
   Phil. Trans. of the Royal Society London, vol. 360, pp. 693-707
6. Interpreting the BOLD Signal.
   N. Logothetis and B. Wandell (2004).
   Annual Review of Physiology. January 2004, vol. 66, pp. 735-769 .
7. Functional imaging of the visual pathways..
   B. Wandell and A. Wade (2003).
   Neurologic Clinics. May 2003, vol. 21, pp. 417-43 .
8. Computational Neuroimaging: Color Representations and Processing.
   B. Wandell (2000)
   The New Cognitive Neurosciences Editor, Michael Gazzaniga. MIT Press, pp. 291-304.
   (The file here is a PDF pre-print).
9. Computational Neuroimaging: Color tuning in two human cortical areas measured using fMRI.
   Wandell, Baseler, Boynton and Engel (2000).
   Color Vision: From Molecular Genetics to Perception.
   Ed. K. Gegenfurtner and L. T. Sharpe, Cambridge University Press.
10. Computational Neuroimaging of Human Visual Cortex.
    B. Wandell (1999). Computational Neuroimaging of Human Visual Cortex
    Annual Review of Neuroscience vol. 10 no. 22, pp. 145-173.
    
    

Visual Field Maps

1. Visual field maps and stimulus selectivity in human ventral occipital cortex.
   Brewer AA, Liu J, Wade AR, Wandell BA (2005)
   Nat Neurosci, vol. 8, no. 8, pp. 1102-9.
   Corrigendum: Nat. Neurosci (2005) vol 8. no 10, pp. 1411.
   The discussion section contains an incorrect citation. In the 3rd paragraph on page 1107, "Tootell et al.16 (subsequent to Halgren et al.)" should read: "Tootell et al.16 (subsequent to Hadjikhani et al.)". The authors regret the error.

1. HTML: Visual field representations and locations of visual areas V1/2/3 in human visual cortex
   (Download PDF)
   R. F. Dougherty, V. M. Koch, A. A. Brewer, B. Fischer, J. Modersitzki and B. A. Wandell (2003).
   Visual field representations and locations of visual areas V1/2/3 in human visual cortex.
   Journal of Vision, 3(10),586-598, DOI 10.1167/3.10.1. (See correction to table.)
2. Visual areas in macaque cortex measured using functional magnetic resonance imaging
   A. A. Brewer, W. A. Press, N. K. Logothetis, and B. A. Wandell (2002)
   J. Neurosci. 22(23) pp. 10416-10426
3. Visual Areas and Spatial Summation in Human Visual Cortex
   Press, Brewer, Dougherty, Wade and Wandell (2001).
   Vision Research, v 41, pp. 1321-1332
4. Topographic Organization of Human Visual Areas in the Absence of Input from Primary Cortex
   Heidi A. Baseler, Antony B. Morland, and Brian A. Wandell.
   J. Neurosci. 1999 19: 2619-2627.
5. Retinotopic organization in human visual cortex and the spatial precision of functional MRI
   Engel, Glover and Wandell (1997).
   Cerebral Cortex, vol. 7, no. 2, pp. 181-92.
6. Functional magnetic resonance imaging of human visual cortex
   Engel, Rumelhart, Wandell, Lee, Shadlen, and Glover (1994).
   Nature, June 16. vol. 369, p. 525.
   
   

Plasticity and development

1. V1 Projection zone signals in human macular degeneration depend on task, not stimulus
   Y. Masuda, S.O. Dumoulin, S. Nakadomari and B.A. Wandell (2006).
   Cerebral Cortex Feb. 3, 2008 [Epub ahead of print].
2. Assessment of stimulus induced changes in human V1 visual field maps.
   Liu JV, Ashida H, Smith AT, Wandell BA. (2006).
   J Neurophysiol Sep 27; [Epub ahead of print]. PMID: 17005617
3. Long-term deprivation affects visual perception and cortex.
   Fine I, Wade AR, Brewer AA, May MG, Goodman DF, Boynton GM, Wandell BA, MacLeod DI (2003).
   Nature Neuroscience 6(9) pp. 915-916
4. Lack of long-term cortical reorganization after macaque retinal lesions.
   Stelios M. Smirnakis Alyssa A. Brewer, Michael C. Schmid, Andreas S. Tolias, Almut Schüz, Mark Augath, Werner Inhoffen, Brian A. Wandell and Nikos K. Logothetis (2005)
   Nature. vol. 435, 19 May, (doi: 10.1038/nature03495)
   News and Views by M. I. Sereno (Nature vol. 435, pp. 288-289 (19 May 2005) | doi: 10.1038/435288a )
   Exchange of views with Calford et al. (Nature, vol. 438, no. 10, p. E3)
5. Reorganization of human cortical maps caused by inherited photoreceptor abnormalities
   Heidi A. Baseler, Alyssa A. Brewer, Lindsay T. Sharpe, Antony B. Morland , Herbert Jägle and Brian A. Wandell (2002).
   Nature Neuroscience, Apr;5(4):364-70.
6. Abnormal retinotopic representations in human visual cortex revealed by fMRI.
   Morland AB, Baseler HA, Hoffmann MB, Sharpe LT, Wandell BA. (2001)
   Acta Psychol (Amst) Apr; 107(1-3):229-47
7. Extrastriate visual signals in the absence of striate cortex in a human hemianope
   Baseler, Morland and Wandell (1998).
   NeuroImage Human Brain Mapping Meeting Abstract.

Color

1. No Functional Magnetic Resonance Imaging Evidence for Brightness and Color Filling-In In Early Human Visual Cortex
   Frans W. Cornelissen, Alex R. Wade, Tony Vladusich, Robert F. Dougherty, and Brian A. Wandell (2006)
   J. Neurosci 26:3634-3641.
2. Specializations for chromatic and temporal signals in human visual cortex.
   J. Liu and B. A. Wandell (2005)
   J. Neurosci. 35(13):3459-3468
3. PDF: Cone signal interactions in direction-selective neurons.
   HTML: Journal of Vision (V 5 No. 7 Article 1, 2005)
   C. L. Barberini, M. R. Cohen, B. A. Wandell and W. T. Newsome (2005)
   Matlab scripts and Image System Engineering Tools (ISET-1.0) from ImagEval
   Journal of Vision.
4. Chromatic Light Adaptation Measured using Functional Magnetic Resonance Imaging.
   A. R. Wade and Brian A. Wandell (2002).
   J. Neurosci, 22 (18):8148-8157
5. Functional Measurements of Human Ventral Occipital Cortex: Retinotopy and Color.
   A. R. Wade, A. Brewer, and Brian A. Wandell (2002).
   Philosophical Transactions of the Royal Society, Series B. (London) Vol: 357 No. 1424 pp. p963- p973
6. Perceived speed of colored stimuli.
   R. F. Dougherty, William A. Press, Brian A. Wandell (1999).
   Neuron, Vol 24 893-899.
7. Color signals in human motion selective cortex.
   B. A. Wandell, Allen B. Poirson, William T. Newsome, Heidi Baseler, Geoffrey Boynton, Alex Huk, Sunil Ghandi and Lindsay T. Sharpe (1999).
   Neuron, vol. 24, 901-909.
8. Color signals in are MT of the macaque monkey.
   E. Seidemann, A. B. Poirson, B. A. Wandell, W. T. Newsome (1999).
   Neuron, vol. 24 911-917.
9. Color tuning in human visual cortex measured using functional magnetic resonance imaging.
   Engel, Zhang and Wandell (1997).
   Nature, July 3, vol. 388, no. 6637.
   The brief Nature paper did not provide an adequate description of the spatial properties of the stimulus, whose diameter subtended 20 deg of visual angle.
   
   

Computational Methods and Visualization

1. Population receptive field estimates in human visual cortex (Galleys)
   Serge O. Dumoulin and Brian A. Wandell (2007)
   Neuroimage. doi:
2. Visualization and Measurement of the Cortical Surface.
   B. Wandell, S. Chial and B. Backus (2000).
   Journal of Cognitive Neuroscience, vol. 12, no. 5. pp. 739-52.
   This paper describes the methods used in the unfolding software that we distribute (see below). It also provides an overview of the principles, problems, and related methods that can be found at other sites.
3. Creating Connected Representations of Cortical Gray Matter for Functional MRI Visualization
   P. Teo, G. Sapiro and B. Wandell (1997).
   IEEE Med. Transactions, vol. 16 (6), 852-863.
   This paper describes the algorithm for obtaining a segmented and connected gray matter representation from T1 weighted MR images.
   The algorithm is implemented in the software package we distribute (see below).
4. Exploration of the Brain's White Matter Pathways with Dynamic Queries.
   David Akers, Anthony Sherbondy, Rachel Mackenzie, Robert Dougherty, Brian Wandell (2004)
   In Proceedings IEEE Visualization, pages 377-384, October 2004.
   Related software and further demonstrations.
5. Exploration of the Brain's White Matter Pathways with Dynamic Queries.
   Anthony Sherbondy, David Akers, Rachel Mackenzie, Robert Dougherty, Brian Wandell. (In Press).
   IEEE Transactions on Visualization and Computer Graphics.
   
   

Visualization software

• Software: Segmentation, unfolding and visualization software
  Distribution as of May 10, 2001

Miscellaneous collaborations

1. Laminar profiles of functional activity in the human brain
   Ress D, Glover GH, Liu J, Wandell B. (2006).
   Neuroimage. Sep 28. PMID: 17011213
2. Predominantly extra-retinotopic cortical response to pattern symmetry.
   Christopher W. Tyler, Heidi A. Baseler, Leonid L. Kontsevich, Lora T. Likova, Alex R. Wade and Brian A. Wandell (2005).
   Neuroimage 24, pp. 306-314.
3. Full brain coverage and high-resollution imaging capabilities of passband b-SSFP fMRI at 3T
   Jin Lee, S. Dumoulin, E. Saritas, G. Glover, B. Wandell, D. Nishimura and J.M. Pauly (2008)
   Magnetic Resonance in Medicine 59, pp. 1099-1110.